STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PSB5_AMBTCBeta-amylase. (587 aa)    
Predicted Functional Partners:
W1NGP7_AMBTC
4-alpha-glucanotransferase.
     
 0.925
W1NJJ1_AMBTC
Aamy domain-containing protein.
     
 0.919
W1NF33_AMBTC
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
     
 0.917
W1NWG9_AMBTC
Uncharacterized protein.
     
 0.910
W1P9X6_AMBTC
Uncharacterized protein.
     
 0.910
W1NG79_AMBTC
Beta-amylase.
  
 
 
0.909
U5D809_AMBTC
Aamy domain-containing protein.
     
 0.908
W1NL06_AMBTC
Aamy domain-containing protein.
     
 0.908
W1PMD1_AMBTC
Aamy domain-containing protein.
     
 0.908
W1PR59_AMBTC
Aamy domain-containing protein.
     
 0.908
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.