STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC85714.1RagB/SusD domain-containing protein. (468 aa)    
Predicted Functional Partners:
SFC85690.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.940
SFC85742.1
Predicted Zn-dependent peptidase.
 
     0.857
SFC85794.1
Methylamine utilisation protein MauE.
  
     0.755
SFC85842.1
Hypothetical protein.
  
     0.733
SFC85891.1
RteC protein.
  
     0.694
SFC85865.1
7-keto-8-aminopelargonate synthetase.
  
     0.677
SFB84271.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.665
SFC72839.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.664
SFC92083.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.648
SFC86015.1
Hypothetical protein.
  
     0.643
Your Current Organism:
Zunongwangia mangrovi
NCBI taxonomy Id: 1334022
Other names: DSM 24499, KCTC 23496, LMG 26237, LMG:26237, Z. mangrovi, Zunongwangia mangrovi Rameshkumar et al. 2014, Zunongwangia sp. P2E16, strain P2E16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.