STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_09947Inner nuclear membrane protein Man1. (355 aa)    
Predicted Functional Partners:
Avbf_01776
Lamin Dm0; Belongs to the intermediate filament family.
    
 0.980
Avbf_04095
Barrier-to-autointegration factor.
   
 0.958
Avbf_13847
Barrier-to-autointegration factor.
   
 0.951
Avbf_11344
Mothers against decapentaplegic homolog.
    
 
 0.944
Avbf_12180
Integrator complex subunit 8.
    
 
 0.944
Avbf_18113
Mothers against decapentaplegic homolog.
    
 
 0.944
Avbf_00929
Cell division cycle 5-like protein.
   
 
 0.936
Avbf_03057
RNA-binding protein 25.
   
 0.893
Avbf_15440
Uncharacterized protein.
   
 0.866
Avbf_09073
DET1-and DDB1-associated protein 1.
    
 
 0.854
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.