Avbf_13977 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_13977

Uncharacterized protein. (264 aa)

Predicted Functional Partners:

Avbf_13160

0.926

Avbf_08441

0.926

Avbf_11798

0.920

Avbf_04423

0.920

Avbf_07856

0.902

Avbf_07737

0.902

Avbf_15395

0.902

Avbf_00788

0.902

Avbf_03486

0.902

Avbf_12418

0.878

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_00788	Avbf_03486	A0A444TI26	A0A444TR08	Ubiquitin-conjugating enzyme E2 D2B.	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.709
Avbf_00788	Avbf_04423	A0A444TI26	A0A444TLS5	Ubiquitin-conjugating enzyme E2 D2B.	Uncharacterized protein.	0.954
Avbf_00788	Avbf_07737	A0A444TI26	A0A444SN37	Ubiquitin-conjugating enzyme E2 D2B.	Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.689
Avbf_00788	Avbf_08441	A0A444TI26	A0A444SY95	Ubiquitin-conjugating enzyme E2 D2B.	Uncharacterized protein.	0.958
Avbf_00788	Avbf_11798	A0A444TI26	A0A444SLA0	Ubiquitin-conjugating enzyme E2 D2B.	Ubiquitin-40S ribosomal protein S27a.	0.981
Avbf_00788	Avbf_12418	A0A444TI26	A0A444SL46	Ubiquitin-conjugating enzyme E2 D2B.	Ubiquilin-1.	0.883
Avbf_00788	Avbf_13160	A0A444TI26	A0A444SK24	Ubiquitin-conjugating enzyme E2 D2B.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.960
Avbf_00788	Avbf_13977	A0A444TI26	A0A444SJW6	Ubiquitin-conjugating enzyme E2 D2B.	Uncharacterized protein.	0.902
Avbf_03486	Avbf_00788	A0A444TR08	A0A444TI26	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2 D2B.	0.709
Avbf_03486	Avbf_04423	A0A444TR08	A0A444TLS5	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.954
Avbf_03486	Avbf_07737	A0A444TR08	A0A444SN37	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.741
Avbf_03486	Avbf_07856	A0A444TR08	A0A444SL74	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.	0.718
Avbf_03486	Avbf_08441	A0A444TR08	A0A444SY95	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.958
Avbf_03486	Avbf_11798	A0A444TR08	A0A444SLA0	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-40S ribosomal protein S27a.	0.996
Avbf_03486	Avbf_12418	A0A444TR08	A0A444SL46	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquilin-1.	0.882
Avbf_03486	Avbf_13160	A0A444TR08	A0A444SK24	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.960
Avbf_03486	Avbf_13977	A0A444TR08	A0A444SJW6	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.902
Avbf_03486	Avbf_15395	A0A444TR08	A0A444T1W9	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.	0.718
Avbf_04423	Avbf_00788	A0A444TLS5	A0A444TI26	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 D2B.	0.954
Avbf_04423	Avbf_03486	A0A444TLS5	A0A444TR08	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.954