STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_3867IclR family transcriptional regulator. (257 aa)    
Predicted Functional Partners:
AKL17_3868
Hydantoinase/oxoprolinase.
 
   
 0.835
AKL17_1332
Hypothetical protein.
  
    0.821
AKL17_0652
Regulatory proteins, IclR.
  
     0.772
AKL17_3615
IclR family transcriptional regulator.
  
     0.765
AKL17_3725
Regulatory proteins, IclR.
  
     0.764
AKL17_3869
ABC-type transport system periplasmic substrate-binding protein.
 
     0.764
AKL17_3616
IclR family transcriptional regulator.
  
     0.758
AKL17_3402
IclR family transcriptional regulator.
  
     0.757
AKL17_3870
ABC-type transport system permease protein.
     
 0.651
AKL17_3871
Oligopeptide ABC transporter permease protein.
       0.649
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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