STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yidAPromiscuous sugar phosphatase, haloacid dehalogenase-like phosphatase family. (273 aa)    
Predicted Functional Partners:
dgt
Deoxyguanosinetriphosphate triphosphohydrolase; Protein involved in dGTPase activity.
 
  
 0.878
lplA
Lipoate-protein ligase A; Protein involved in catalytic activity and cellular protein modification process.
       0.810
WDC_0229
Hypothetical protein.
     
 0.615
WDC_0340
Cof hydrolase like protein.
  
 
 
0.522
rpoE
DNA-directed RNA polymerase delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
       0.519
WDC_1097
PTS system, N-acetylglucosamine-specific; Protein involved in protein-N(PI)-phosphohistidine-sugar phosphotransferase activity.
 
   
 0.425
WDC_1725
Riboflavin kinase; Protein involved in FMN adenylyltransferase activity and riboflavin kinase activity; Belongs to the ribF family.
   
 0.418
nfsA
Oxygen-insensitive NADPH nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
  0.417
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.