STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000526695_00603Unannotated protein. (368 aa)    
Predicted Functional Partners:
GCA_000526695_01539
Unannotated protein.
  
 
 0.825
GCA_000526695_02051
Unannotated protein.
  
 
 0.720
GCA_000526695_01023
Unannotated protein.
     
 0.706
GCA_000526695_01499
Unannotated protein.
   
 
 0.692
GCA_000526695_00594
Unannotated protein.
 
 
 
  0.691
GCA_000526695_00602
Unannotated protein.
 
     0.661
GCA_000526695_00601
Unannotated protein.
  
    0.615
GCA_000526695_01184
Unannotated protein.
 
 
 0.608
GCA_000526695_01540
Unannotated protein.
 
 
 0.608
GCA_000526695_02091
Unannotated protein.
 
 
 0.608
Your Current Organism:
Carnimonas nigrificans
NCBI taxonomy Id: 1336245
Other names: C. nigrificans ATCC BAA-78, Carnimonas nigrificans ATCC BAA-78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.