STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000526695_01417Unannotated protein. (260 aa)    
Predicted Functional Partners:
GCA_000526695_00809
Unannotated protein.
    
 0.906
GCA_000526695_00775
Unannotated protein.
   
 
  0.885
GCA_000526695_00810
Unannotated protein.
  
 0.827
GCA_000526695_01539
Unannotated protein.
    
 0.818
GCA_000526695_02029
Unannotated protein.
 
 
 0.815
GCA_000526695_02279
Unannotated protein.
   
 
  0.813
GCA_000526695_02449
Unannotated protein.
   
 
  0.813
GCA_000526695_01415
Unannotated protein.
       0.615
GCA_000526695_01416
Unannotated protein.
  
    0.615
GCA_000526695_00071
Unannotated protein.
     0.607
Your Current Organism:
Carnimonas nigrificans
NCBI taxonomy Id: 1336245
Other names: C. nigrificans ATCC BAA-78, Carnimonas nigrificans ATCC BAA-78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.