ACPL_2992 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_2992

Ricin. (245 aa)

Predicted Functional Partners:

ACPL_2584

0.636

ACPL_4647

0.636

asp3.2

0.632

celY

0.622

nedA

0.579

ACPL_2827

0.574

ACPL_6836

0.558

ACPL_6939

0.521

ACPL_4779

0.509

ACPL_4966

0.492

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_2584	ACPL_2992	ACPL_2584	ACPL_2992	Uncharacterized protein conserved in bacteria.	Ricin.	0.636
ACPL_2584	ACPL_4647	ACPL_2584	ACPL_4647	Uncharacterized protein conserved in bacteria.	Abrin-c.	0.496
ACPL_2584	ACPL_4779	ACPL_2584	ACPL_4779	Uncharacterized protein conserved in bacteria.	Beta-agarase AgaB34; O-Glycosyl hydrolase.	0.550
ACPL_2584	asp3.2	ACPL_2584	ACPL_3689	Uncharacterized protein conserved in bacteria.	Polypeptide N-acetylgalactosaminyltransferase 13; Lysophospholipase L1 and related esterases.	0.534
ACPL_2584	celY	ACPL_2584	ACPL_2583	Uncharacterized protein conserved in bacteria.	Exoglucanase-2; RTX toxins and related Ca2+-binding proteins.	0.843
ACPL_2584	nedA	ACPL_2584	ACPL_610	Uncharacterized protein conserved in bacteria.	Sialidase; FOG: PKD repeat.	0.495
ACPL_2827	ACPL_2992	ACPL_2827	ACPL_2992	Coagulation factor 5/8 type domain protein; Beta-glucanase/Beta-glucan synthetase.	Ricin.	0.574
ACPL_2827	ACPL_4647	ACPL_2827	ACPL_4647	Coagulation factor 5/8 type domain protein; Beta-glucanase/Beta-glucan synthetase.	Abrin-c.	0.506
ACPL_2827	ACPL_6836	ACPL_2827	ACPL_6836	Coagulation factor 5/8 type domain protein; Beta-glucanase/Beta-glucan synthetase.	APHP domain protein.	0.545
ACPL_2992	ACPL_2584	ACPL_2992	ACPL_2584	Ricin.	Uncharacterized protein conserved in bacteria.	0.636
ACPL_2992	ACPL_2827	ACPL_2992	ACPL_2827	Ricin.	Coagulation factor 5/8 type domain protein; Beta-glucanase/Beta-glucan synthetase.	0.574
ACPL_2992	ACPL_4647	ACPL_2992	ACPL_4647	Ricin.	Abrin-c.	0.636
ACPL_2992	ACPL_4779	ACPL_2992	ACPL_4779	Ricin.	Beta-agarase AgaB34; O-Glycosyl hydrolase.	0.509
ACPL_2992	ACPL_4966	ACPL_2992	ACPL_4966	Ricin.	Hypothetical protein; FOG: PKD repeat.	0.492
ACPL_2992	ACPL_6836	ACPL_2992	ACPL_6836	Ricin.	APHP domain protein.	0.558
ACPL_2992	ACPL_6939	ACPL_2992	ACPL_6939	Ricin.	Teneurin-3; Rhs family protein.	0.521
ACPL_2992	asp3.2	ACPL_2992	ACPL_3689	Ricin.	Polypeptide N-acetylgalactosaminyltransferase 13; Lysophospholipase L1 and related esterases.	0.632
ACPL_2992	celY	ACPL_2992	ACPL_2583	Ricin.	Exoglucanase-2; RTX toxins and related Ca2+-binding proteins.	0.622
ACPL_2992	nedA	ACPL_2992	ACPL_610	Ricin.	Sialidase; FOG: PKD repeat.	0.579
ACPL_4647	ACPL_2584	ACPL_4647	ACPL_2584	Abrin-c.	Uncharacterized protein conserved in bacteria.	0.496