STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
CDF79917.1Beta-galactosidase (GH2); Glycoside hydrolase that may be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Belongs to the glycosyl hydrolase 2 family. (1012 aa)    
Predicted Functional Partners:
CDF79916.1
Glycoside hydrolase (GH2); Glycoside hydrolase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Belongs to the glycosyl hydrolase 2 family.
 
    0.883
CDF79918.1
Beta-galactosidase (GH2); Beta-glucuronidase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Beta-glucuronidase removes GlcA side chains present on some O2 residues of Rha3S. Can remove the GlcA side chains from polymeric ulvan or from smaller oligomers. Belongs to the glycosyl hydrolase 2 family.
 
    
0.825
CDF79921.1
alpha-L-rhamnosidase (GH78); Alpha-L-rhamnosidase involved in ulvan degradation (Ref.2,. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Alpha-L-rhamnosidase converts Rha-Xyl-Rha3S, the product of a sulfatase acting on Rha3S-Xyl-Rha3S oligosaccharides, to Rha and Xyl- Rha3S. The enzyme is able to degrade p-nitrophenyl- alpha-L-rhamnopyranoside (PNP-Rha) in vitro. Belongs to t [...]
 
   0.813
CDF79911.1
Conserved hypothetical protein; Ulvan lyase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Ulvan lyase catalyzes the endolytic cleavage of the glycosidic bond between Rha3S and the uronic acids GlcA or IduA, producing oligosaccharides that have unsaturated 4-deoxy-L-threo-hex-4-enopyranosiduronic acid (deltaUA) at the non-reducing end. This resu [...]
 
    0.800
CDF79919.1
Arylsulfatase; Sulfatase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). The sulfatase is most active on ulvan polymers, particularly on xylose-rich ulvan. It can desulfate oligosaccharides containing the motif Rha3S- Xyl2S-Rha3S and thus likely proceeds in an endolytic mode of action, removing sulfates from xylose residues in periplasmic oligosa [...]
 
   0.747
CDF79929.1
alpha-L-rhamnosidase (GH78); Alpha-L-rhamnosidase that may be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable); Belongs to the glycosyl hydrolase 78 family.
  
   0.736
CDF79928.1
Beta-xylosidase (GH43); Xylosidase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Beta- xylosidase converts Xyl-Rha3S, a product of alpha-L-rhamnosidase acting on Rha-Xyl-Rha3S oligosaccharides, further to Xyl and Rha3S.
  
  
  0.673
CDF79913.1
Arylsulfatase; Sulfatase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
 
   0.659
CDF79915.1
Arylsulfatase; Sulfatase that may be involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Has no activity on different ulvan polymers.
 
   0.649
CDF79920.1
Sulfatase; Sulfatase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
 
   0.617
Your Current Organism:
Formosa agariphila
NCBI taxonomy Id: 1347342
Other names: Bacteroidetes bacterium KMM 3901, F. agariphila KMM 3901, Formosa agariphila KMM 3901
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