STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDF79921.1alpha-L-rhamnosidase (GH78); Alpha-L-rhamnosidase involved in ulvan degradation (Ref.2,. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Alpha-L-rhamnosidase converts Rha-Xyl-Rha3S, the product of a sulfatase acting on Rha3S-Xyl-Rha3S oligosaccharides, to Rha and Xyl- Rha3S. The enzyme is able to degrade p-nitrophenyl- alpha-L-rhamnopyranoside (PNP-Rha) in vitro. Belongs to t [...] (903 aa)    
Predicted Functional Partners:
CDF79916.1
Glycoside hydrolase (GH2); Glycoside hydrolase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Belongs to the glycosyl hydrolase 2 family.
 
   
 0.872
CDF79920.1
Sulfatase; Sulfatase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
 
     0.837
CDF79918.1
Beta-galactosidase (GH2); Beta-glucuronidase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Beta-glucuronidase removes GlcA side chains present on some O2 residues of Rha3S. Can remove the GlcA side chains from polymeric ulvan or from smaller oligomers. Belongs to the glycosyl hydrolase 2 family.
 
   0.824
CDF79917.1
Beta-galactosidase (GH2); Glycoside hydrolase that may be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Belongs to the glycosyl hydrolase 2 family.
 
   0.813
CDF79919.1
Arylsulfatase; Sulfatase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). The sulfatase is most active on ulvan polymers, particularly on xylose-rich ulvan. It can desulfate oligosaccharides containing the motif Rha3S- Xyl2S-Rha3S and thus likely proceeds in an endolytic mode of action, removing sulfates from xylose residues in periplasmic oligosa [...]
 
     0.725
CDF79901.1
Rhamnulose-1-phosphate aldolase.
 
   0.692
CDF79909.1
Beta-galactosidase (GH2); Glycoside hydrolase that may be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Belongs to the glycosyl hydrolase 2 family.
 
   0.662
rhaM
L-rhamnose mutarotase; L-rhamnose mutarotase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). L-rhamnose mutarotase catalyzes the anomeric conversion of alpha- to beta-L-rhamnose.
 
    0.633
CDF79911.1
Conserved hypothetical protein; Ulvan lyase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Ulvan lyase catalyzes the endolytic cleavage of the glycosidic bond between Rha3S and the uronic acids GlcA or IduA, producing oligosaccharides that have unsaturated 4-deoxy-L-threo-hex-4-enopyranosiduronic acid (deltaUA) at the non-reducing end. This resu [...]
 
     0.615
CDF79932.1
Glycoside hydrolase (GH39); Alpha-rhamnosidase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Endo-acting alpha-1,4-L-rhamnosidase cleaves rhamnose sections interspersed between xylose residues within the polymer, degrading larger oligomers with consecutive Xyl-Rha3S units that are resistant to the ulvan lyases and producing dimers Xyl-Rha3S an [...]
  
     0.595
Your Current Organism:
Formosa agariphila
NCBI taxonomy Id: 1347342
Other names: Bacteroidetes bacterium KMM 3901, F. agariphila KMM 3901, Formosa agariphila KMM 3901
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