STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rhaML-rhamnose mutarotase; L-rhamnose mutarotase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). L-rhamnose mutarotase catalyzes the anomeric conversion of alpha- to beta-L-rhamnose. (104 aa)    
Predicted Functional Partners:
CDF80770.1
Carbohydrate kinase.
 
  
 0.846
CDF79899.1
Pentulose/hexulose kinase.
 
  
 0.798
CDF79901.1
Rhamnulose-1-phosphate aldolase.
 
  
 0.721
CDF79929.1
alpha-L-rhamnosidase (GH78); Alpha-L-rhamnosidase that may be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable); Belongs to the glycosyl hydrolase 78 family.
 
    0.678
CDF79923.1
Conserved hypothetical protein; May be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
 
     0.661
CDF79921.1
alpha-L-rhamnosidase (GH78); Alpha-L-rhamnosidase involved in ulvan degradation (Ref.2,. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Alpha-L-rhamnosidase converts Rha-Xyl-Rha3S, the product of a sulfatase acting on Rha3S-Xyl-Rha3S oligosaccharides, to Rha and Xyl- Rha3S. The enzyme is able to degrade p-nitrophenyl- alpha-L-rhamnopyranoside (PNP-Rha) in vitro. Belongs to t [...]
 
    0.633
CDF79916.1
Glycoside hydrolase (GH2); Glycoside hydrolase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Belongs to the glycosyl hydrolase 2 family.
 
   
 0.602
BN863_160
Xylulose kinase.
  
  
 0.596
CDF79924.1
Conserved hypothetical protein; May be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
 
     0.541
CDF79900.1
Xylose isomerase-like TIM barrel domain protein.
 
   
 0.534
Your Current Organism:
Formosa agariphila
NCBI taxonomy Id: 1347342
Other names: Bacteroidetes bacterium KMM 3901, F. agariphila KMM 3901, Formosa agariphila KMM 3901
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