STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CDF79937.1alpha-L-rhamnosidase/sulfatase (GH78); Bifunctional enzyme containing sulfatase and alpha-L- rhamnosidase activities involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). The sulfatase specifically desulfates L-rhamnose at the 3- position and can act on the motif Rha3S-Xyl-Rha3S in an exolytic mode of action, producing Rha-Xyl-Rha3S. Also desulfates R [...] (1154 aa)    
Predicted Functional Partners:
CDF79934.1
Glycoside hydrolase (GH105); Unsaturated beta-glucuronyl hydrolase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Unsaturated 3S-rhamnoglycuronyl hydrolase works together with ulvan lyases to fully degrade the ulvan polymer, catalyzing specifically the cleavage of the unsaturated 4-deoxy-L- threo-hex-4-enopyranosiduronic acid (deltaUA) of deltaU [...]
 
     0.853
CDF79930.1
Conserved hypothetical protein; Broad-specificity lyase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Ulvan lyase catalyzes the endolytic cleavage of the glycosidic bond between Rha3S and the uronic acids GlcA or IduA, producing oligosaccharides that have unsaturated 4-deoxy-L- threo-hex-4-enopyranosiduronic acid (deltaUA) at the non-reducing [...]
 
     0.799
CDF79931.1
Ulvanlyase; Ulvan lyase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3- sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L- iduronic acid (IduA), or D-xylose (Xyl) (Probable). Ulvan lyase catalyzes the endolytic cleavage of the glycosidic bond between Rha3S and the uronic acids GlcA or IduA, producing oligosaccharides that have unsaturated 4-deoxy-L-threo-hex-4-enopyranosiduronic acid (deltaUA) at the non-reducing end. This results eventually in [...]
 
     0.798
CDF79923.1
Conserved hypothetical protein; May be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
  
     0.769
CDF79926.1
SusD-like protein; Polysaccharide-binding protein probably involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). The SusD-like protein may mediate ulvan oligomer-binding before transport in the periplasm for further degradation (By similarity).
  
     0.759
CDF79911.1
Conserved hypothetical protein; Ulvan lyase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Ulvan lyase catalyzes the endolytic cleavage of the glycosidic bond between Rha3S and the uronic acids GlcA or IduA, producing oligosaccharides that have unsaturated 4-deoxy-L-threo-hex-4-enopyranosiduronic acid (deltaUA) at the non-reducing end. This resu [...]
  
     0.749
CDF79916.1
Glycoside hydrolase (GH2); Glycoside hydrolase involved in ulvan degradation. Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). Belongs to the glycosyl hydrolase 2 family.
  
     0.736
CDF79924.1
Conserved hypothetical protein; May be involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D-glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable).
  
     0.724
CDF79927.1
TonB-dependent receptor; TonB-dependent receptor probably involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). The TonB-dependent receptor may mediate transport of ulvan oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation (By similarity).
  
     0.703
CDF79939.1
SusD-like protein; Polysaccharide-binding protein probably involved in ulvan degradation (Probable). Ulvan is the main polysaccharide component of the Ulvales (green seaweed) cell wall. It is composed of disaccharide building blocks comprising 3-sulfated rhamnose (Rha3S) linked to D- glucuronic acid (GlcA), L-iduronic acid (IduA), or D-xylose (Xyl) (Probable). The SusD-like protein may mediate ulvan oligomer-binding before transport in the periplasm for further degradation (By similarity).
 
     0.675
Your Current Organism:
Formosa agariphila
NCBI taxonomy Id: 1347342
Other names: Bacteroidetes bacterium KMM 3901, F. agariphila KMM 3901, Formosa agariphila KMM 3901
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