STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_01835Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (433 aa)    
Predicted Functional Partners:
DT23_01830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
DT23_01825
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
DT23_01820
Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.996
DT23_01815
Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.994
DT23_18310
Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.936
DT23_04550
ATPase AAA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
      0.856
DT23_08115
ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.674
DT23_09945
Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
  0.674
ureE
Hypothetical protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.652
ureF
Hypothetical protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.617
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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