STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_07520Hypothetical protein; Displays ATPase and GTPase activities. (308 aa)    
Predicted Functional Partners:
DT23_14690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 
 0.909
rne
Hypothetical protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.895
DT23_07510
HPr kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.887
DT23_07515
PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.866
DT23_07525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.845
DT23_07530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.839
DT23_11035
PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.838
DT23_07505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.767
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.673
DT23_07535
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.658
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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