STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DT23_15710Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (180 aa)    
Predicted Functional Partners:
DT23_15715
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.839
DT23_03125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.676
DT23_07300
Elongation factor P; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.666
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
       0.630
DT23_04865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.606
DT23_07420
ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.576
DT23_02090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.545
DT23_15705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.531
DT23_11555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.518
DT23_04285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.514
Your Current Organism:
Thioclava indica
NCBI taxonomy Id: 1353528
Other names: Albirhodobacter sp. MCCC 1A00513, KCTC 33533, LMG 27698, LMG:27698, MCCC 1A00513, T. indica, Thioclava indica Liu et al. 2015, Thioclava sp. DT23-4, Thioclava sp. MCCC 1A00513, strain DT23-4
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