STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF39Pre-mRNA processing factor 39. (668 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 
 0.952
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 
 0.951
SF3B1
Splicing factor 3b subunit 1.
   
 0.944
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.934
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA.
    
 0.928
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.912
C3H6orf52
Trnau1ap domain-containing protein.
   
 
 0.883
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
   
 
 0.883
LUC7L
LUC7 like.
   
 0.869
LOC100017621
Uncharacterized protein.
   
 0.869
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.