STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NXF1Uncharacterized protein. (624 aa)    
Predicted Functional Partners:
ALYREF
Aly/REF export factor.
    
 0.996
RAE1
Ribonucleic acid export 1.
    
 0.992
LOC100028638
NTF2 domain-containing protein.
    
 0.988
NXT2
NTF2 domain-containing protein.
    
 0.988
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.960
SRSF5
Serine and arginine rich splicing factor 5.
   
 0.960
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.960
SRSF4
Serine and arginine rich splicing factor 4.
   
 0.960
SRSF6
Serine and arginine rich splicing factor 6.
   
 0.960
SRSF1
Uncharacterized protein.
   
 0.957
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.