STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1LTranscription elongation regulator 1 like. (585 aa)    
Predicted Functional Partners:
PRPF38A
Pre-mRNA processing factor 38A.
   
 0.931
DDX46
DEAD-box helicase 46.
   
 0.914
SNW1
SNW domain containing 1.
   
 0.865
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.865
SF3B4
Splicing factor 3b subunit 4.
    
 
 0.857
PRPF19
Pre-mRNA processing factor 19.
    
 0.847
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.844
PLRG1
Pleiotropic regulator 1.
    
  0.841
BCAS2
BCAS2 pre-mRNA processing factor.
    
  0.834
PRPF8
Pre-mRNA processing factor 8.
   
 
 0.833
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.