ARID2 protein (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARID2

AT-rich interaction domain 2. (1836 aa)

Predicted Functional Partners:

SMARCE1

0.993

PBRM1

0.992

PHF10

0.991

SMARCB1

0.990

SMARCC1

0.985

SMARCD3

0.977

BRD7

0.967

SMARCA2

0.964

SMARCA4

0.964

DPF3

0.936

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID2	BRD7	ENSMODP00000058088	ENSMODP00000016344	AT-rich interaction domain 2.	Bromo domain-containing protein.	0.967
ARID2	DPF3	ENSMODP00000058088	ENSMODP00000045581	AT-rich interaction domain 2.	Double PHD fingers 3.	0.936
ARID2	PBRM1	ENSMODP00000058088	ENSMODP00000014158	AT-rich interaction domain 2.	Polybromo 1.	0.992
ARID2	PHF10	ENSMODP00000058088	ENSMODP00000007051	AT-rich interaction domain 2.	PHD finger protein 10.	0.991
ARID2	SMARCA2	ENSMODP00000058088	ENSMODP00000004375	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.964
ARID2	SMARCA4	ENSMODP00000058088	ENSMODP00000007805	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.964
ARID2	SMARCB1	ENSMODP00000058088	ENSMODP00000027315	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.990
ARID2	SMARCC1	ENSMODP00000058088	ENSMODP00000017766	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.985
ARID2	SMARCD3	ENSMODP00000058088	ENSMODP00000005484	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.977
ARID2	SMARCE1	ENSMODP00000058088	ENSMODP00000016507	AT-rich interaction domain 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.993
BRD7	ARID2	ENSMODP00000016344	ENSMODP00000058088	Bromo domain-containing protein.	AT-rich interaction domain 2.	0.967
BRD7	DPF3	ENSMODP00000016344	ENSMODP00000045581	Bromo domain-containing protein.	Double PHD fingers 3.	0.892
BRD7	PBRM1	ENSMODP00000016344	ENSMODP00000014158	Bromo domain-containing protein.	Polybromo 1.	0.840
BRD7	PHF10	ENSMODP00000016344	ENSMODP00000007051	Bromo domain-containing protein.	PHD finger protein 10.	0.958
BRD7	SMARCA2	ENSMODP00000016344	ENSMODP00000004375	Bromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.863
BRD7	SMARCA4	ENSMODP00000016344	ENSMODP00000007805	Bromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.863
BRD7	SMARCB1	ENSMODP00000016344	ENSMODP00000027315	Bromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.	0.937
BRD7	SMARCC1	ENSMODP00000016344	ENSMODP00000017766	Bromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.925
BRD7	SMARCD3	ENSMODP00000016344	ENSMODP00000005484	Bromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.940
BRD7	SMARCE1	ENSMODP00000016344	ENSMODP00000016507	Bromo domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.967