STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKHD1PKHD1 ciliary IPT domain containing fibrocystin/polyductin. (4092 aa)    
Predicted Functional Partners:
PKD2
Polycystin 2, transient receptor potential cation channel.
      
 0.708
PKD1
Polycystin 1, transient receptor potential channel interacting.
      
 0.671
AP5B1
Adaptor related protein complex 5 subunit beta 1.
     
 0.629
NEK8
NIMA related kinase 8.
      
 0.454
IFT88
Intraflagellar transport 88.
     
 0.438
RYR1
Ryanodine receptor 1.
   
  
 0.411
CBLB
Cbl proto-oncogene B.
    
 0.410
CBL
Cbl proto-oncogene.
    
 0.410
CBLC
Cbl-PTB domain-containing protein.
    
 0.410
ELF3
E74 like ETS transcription factor 3.
      
 0.404
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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