AYL99_09771 protein (Fonsecaea erecta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AYL99_09771

Uncharacterized protein. (905 aa)

Predicted Functional Partners:

AYL99_02862

0.904

AYL99_10269

0.889

AYL99_06526

0.832

AYL99_04700

0.809

AYL99_10324

0.807

AYL99_10756

0.805

AYL99_05434

0.803

AYL99_04098

0.799

AYL99_05254

0.797

AYL99_03941

0.797

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_02862	AYL99_03941	A0A178ZXB1	A0A178ZPI4	Brix domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.907
AYL99_02862	AYL99_04098	A0A178ZXB1	A0A178ZSC6	Brix domain-containing protein.	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.994
AYL99_02862	AYL99_04700	A0A178ZXB1	A0A178ZTX8	Brix domain-containing protein.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.965
AYL99_02862	AYL99_05254	A0A178ZXB1	A0A178ZKQ8	Brix domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.912
AYL99_02862	AYL99_05434	A0A178ZXB1	A0A178ZL92	Brix domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.994
AYL99_02862	AYL99_06526	A0A178ZXB1	A0A178ZHH0	Brix domain-containing protein.	Brix domain-containing protein.	0.966
AYL99_02862	AYL99_09771	A0A178ZXB1	A0A178Z768	Brix domain-containing protein.	Uncharacterized protein.	0.904
AYL99_02862	AYL99_10269	A0A178ZXB1	A0A178Z757	Brix domain-containing protein.	60S ribosomal protein L5.	0.973
AYL99_02862	AYL99_10324	A0A178ZXB1	A0A178Z762	Brix domain-containing protein.	Utp12 domain-containing protein.	0.904
AYL99_02862	AYL99_10756	A0A178ZXB1	A0A178Z6G4	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.999
AYL99_03941	AYL99_02862	A0A178ZPI4	A0A178ZXB1	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.907
AYL99_03941	AYL99_04098	A0A178ZPI4	A0A178ZSC6	WD_REPEATS_REGION domain-containing protein.	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.906
AYL99_03941	AYL99_05254	A0A178ZPI4	A0A178ZKQ8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
AYL99_03941	AYL99_05434	A0A178ZPI4	A0A178ZL92	WD_REPEATS_REGION domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.938
AYL99_03941	AYL99_06526	A0A178ZPI4	A0A178ZHH0	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.870
AYL99_03941	AYL99_09771	A0A178ZPI4	A0A178Z768	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.797
AYL99_03941	AYL99_10324	A0A178ZPI4	A0A178Z762	WD_REPEATS_REGION domain-containing protein.	Utp12 domain-containing protein.	0.999
AYL99_03941	AYL99_10756	A0A178ZPI4	A0A178Z6G4	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.844
AYL99_04098	AYL99_02862	A0A178ZSC6	A0A178ZXB1	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Brix domain-containing protein.	0.994
AYL99_04098	AYL99_03941	A0A178ZSC6	A0A178ZPI4	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	WD_REPEATS_REGION domain-containing protein.	0.906