STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AYL99_00214TRUD domain-containing protein. (791 aa)    
Predicted Functional Partners:
AYL99_01499
SpoU_methylase domain-containing protein.
   
   0.937
AYL99_01815
Ribosomal protein L15.
   
   0.926
AYL99_05237
Ribosomal protein L13.
   
   0.921
AYL99_00775
Mitochondrial GTPase 1; Mitochondrial GTPase involved in assembly of the large ribosomal subunit. Plays a role in expression of the mitochondrial translational machinery; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
   0.921
AYL99_03332
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.917
AYL99_02070
L51_S25_CI-B8 domain-containing protein.
   
   0.913
AYL99_01011
tRNA modification GTPase TrmE.
   
   0.913
AYL99_00897
Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
   0.913
AYL99_11109
Ribosome biogenesis GTP-binding protein YsxC.
    
   0.911
AYL99_07964
Ribosomal protein L24.
    
   0.911
Your Current Organism:
Fonsecaea erecta
NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a
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