STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X2HCN720S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (451 aa)    
Predicted Functional Partners:
A0A1X2H3T5
RIO1 family-domain-containing protein.
   
 0.999
A0A1X2HDW2
Low temperature viability protein-domain-containing protein.
   
 0.999
A0A1X2HIK6
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
   
 0.999
A0A1X2HN56
Pre-rRNA-processing protein pno1.
   
 0.999
A0A1X2HQA8
Bms1-type G domain-containing protein.
   
 0.999
A0A1X2H1P4
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
 0.998
A0A1X2HQ95
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 0.998
A0A1X2HA61
40S ribosomal protein.
    
 0.997
A0A1X2H1J5
Bystin.
   
 0.996
A0A1X2HAP0
Bystin-domain-containing protein.
   
 0.996
Your Current Organism:
Syncephalastrum racemosum
NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.