chiPu_0008776 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0008776

Par3_HAL_N_term domain-containing protein. (133 aa)

Predicted Functional Partners:

chiPu_0001935

0.931

chiPu_0010726

0.931

chiPu_0005424

0.899

chiPu_0005446

0.899

chiPu_0013429

0.899

chiPu_0013493

0.850

chiPu_0015451

0.843

chiPu_0007373

0.842

chiPu_0019691

0.827

chiPu_0007313

0.827

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0001935	chiPu_0005424	A0A401RZL2	A0A401S9C9	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.968
chiPu_0001935	chiPu_0005446	A0A401RZL2	A0A401S9E5	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.982
chiPu_0001935	chiPu_0007313	A0A401RZL2	A0A401SEQ6	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Belongs to the MAGUK family.	0.676
chiPu_0001935	chiPu_0008776	A0A401RZL2	A0A401SIV3	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Par3_HAL_N_term domain-containing protein.	0.931
chiPu_0001935	chiPu_0013429	A0A401RZL2	A0A401SX11	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.968
chiPu_0001935	chiPu_0019691	A0A401RZL2	A0A401RSV0	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.676
chiPu_0005424	chiPu_0001935	A0A401S9C9	A0A401RZL2	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.968
chiPu_0005424	chiPu_0005446	A0A401S9C9	A0A401S9E5	Uncharacterized protein.	Uncharacterized protein.	0.907
chiPu_0005424	chiPu_0007313	A0A401S9C9	A0A401SEQ6	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.711
chiPu_0005424	chiPu_0008776	A0A401S9C9	A0A401SIV3	Uncharacterized protein.	Par3_HAL_N_term domain-containing protein.	0.899
chiPu_0005424	chiPu_0010726	A0A401S9C9	A0A401SPD2	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.988
chiPu_0005424	chiPu_0013429	A0A401S9C9	A0A401SX11	Uncharacterized protein.	Uncharacterized protein.	0.891
chiPu_0005424	chiPu_0019691	A0A401S9C9	A0A401RSV0	Uncharacterized protein.	Uncharacterized protein.	0.711
chiPu_0005446	chiPu_0001935	A0A401S9E5	A0A401RZL2	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.982
chiPu_0005446	chiPu_0005424	A0A401S9E5	A0A401S9C9	Uncharacterized protein.	Uncharacterized protein.	0.907
chiPu_0005446	chiPu_0007313	A0A401S9E5	A0A401SEQ6	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.711
chiPu_0005446	chiPu_0008776	A0A401S9E5	A0A401SIV3	Uncharacterized protein.	Par3_HAL_N_term domain-containing protein.	0.899
chiPu_0005446	chiPu_0010726	A0A401S9E5	A0A401SPD2	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.991
chiPu_0005446	chiPu_0013429	A0A401S9E5	A0A401SX11	Uncharacterized protein.	Uncharacterized protein.	0.908
chiPu_0005446	chiPu_0019691	A0A401S9E5	A0A401RSV0	Uncharacterized protein.	Uncharacterized protein.	0.711