chiPu_0025501 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0025501

Thiolase_C domain-containing protein. (68 aa)

Predicted Functional Partners:

chiPu_0009336

0.980

chiPu_0025503

0.980

chiPu_0018839

0.979

chiPu_0006291

0.969

chiPu_0017775

0.968

chiPu_0007193

0.968

chiPu_0033479

0.968

chiPu_0028206

0.939

chiPu_0030814

0.939

chiPu_0001782

0.924

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0001782	chiPu_0007193	A0A401RYZ5	A0A401SED8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.880
chiPu_0001782	chiPu_0009336	A0A401RYZ5	A0A401SKG1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	ACB domain-containing protein.	0.998
chiPu_0001782	chiPu_0017775	A0A401RYZ5	A0A401RIP2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.886
chiPu_0001782	chiPu_0018839	A0A401RYZ5	A0A401RPY2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.907
chiPu_0001782	chiPu_0025501	A0A401RYZ5	A0A401TFG2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Thiolase_C domain-containing protein.	0.924
chiPu_0001782	chiPu_0025503	A0A401RYZ5	A0A401TFD7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.998
chiPu_0001782	chiPu_0028206	A0A401RYZ5	A0A401TNA7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.965
chiPu_0001782	chiPu_0030814	A0A401RYZ5	A0A401TW72	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.965
chiPu_0001782	chiPu_0033479	A0A401RYZ5	A0A401U3K2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	3HCDH domain-containing protein.	0.886
chiPu_0006291	chiPu_0009336	A0A401SBT4	A0A401SKG1	WD_REPEATS_REGION domain-containing protein.	ACB domain-containing protein.	0.519
chiPu_0006291	chiPu_0025501	A0A401SBT4	A0A401TFG2	WD_REPEATS_REGION domain-containing protein.	Thiolase_C domain-containing protein.	0.969
chiPu_0006291	chiPu_0025503	A0A401SBT4	A0A401TFD7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.519
chiPu_0007193	chiPu_0001782	A0A401SED8	A0A401RYZ5	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.880
chiPu_0007193	chiPu_0009336	A0A401SED8	A0A401SKG1	Uncharacterized protein.	ACB domain-containing protein.	0.837
chiPu_0007193	chiPu_0017775	A0A401SED8	A0A401RIP2	Uncharacterized protein.	Uncharacterized protein.	0.773
chiPu_0007193	chiPu_0018839	A0A401SED8	A0A401RPY2	Uncharacterized protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.817
chiPu_0007193	chiPu_0025501	A0A401SED8	A0A401TFG2	Uncharacterized protein.	Thiolase_C domain-containing protein.	0.968
chiPu_0007193	chiPu_0025503	A0A401SED8	A0A401TFD7	Uncharacterized protein.	Uncharacterized protein.	0.837
chiPu_0007193	chiPu_0028206	A0A401SED8	A0A401TNA7	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.712
chiPu_0007193	chiPu_0030814	A0A401SED8	A0A401TW72	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.712