STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHATCholine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family. (642 aa)    
Predicted Functional Partners:
GPCPD1
Glycerophosphocholine phosphodiesterase 1.
   
 
 0.925
PHOSPHO1
Phosphoethanolamine/phosphocholine phosphatase.
     
 0.901
CHKA
Choline kinase alpha.
 
 
 
  0.901
SCP2
Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.822
SLC18A3
Solute carrier family 18 member A3.
 
 
  
 0.764
HSDL2
Hydroxysteroid dehydrogenase like 2.
   
 0.751
SLC25A20
Solute carrier family 25 member 20; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.734
HTD2
Hydroxyacyl-thioester dehydratase type 2.
   
 0.720
RPP14
Ribonuclease P/MRP subunit p14.
   
 0.720
PEX14
Peroxisomal biogenesis factor 14.
    
 0.626
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.