STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLNS1AChloride nucleotide-sensitive channel 1A. (246 aa)    
Predicted Functional Partners:
LSM10
LSM10, U7 small nuclear RNA associated.
   
 0.992
WDR77
WD repeat domain 77.
   
 0.982
SNRPD2
Small nuclear ribonucleoprotein Sm D2.
   
 0.946
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.935
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.927
SPATA6L
SPATA6 domain-containing protein.
    
 0.922
K7EY90_PELSI
Uncharacterized protein.
   
 0.891
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.889
LOC112547413
Tudor domain-containing protein.
   
 0.869
K7G8H6_PELSI
Tudor domain-containing protein.
   
 0.869
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.