STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOXF2Forkhead box F2. (367 aa)    
Predicted Functional Partners:
NKX3-2
NK3 homeobox 2.
   
 
 0.639
NKX2-5
NK2 homeobox 5.
    
 
 0.569
GATA4
GATA binding protein 4.
   
 0.514
GATA5
GATA binding protein 5.
   
 0.514
GATA6
GATA binding protein 6.
   
 0.499
BMP2
Bone morphogenetic protein 2.
     
 0.493
BMP4
Bone morphogenetic protein 4.
     
 0.493
SIRT1
Deacetylase sirtuin-type domain-containing protein.
    
 0.463
SHH
Sonic hedgehog signaling molecule.
     
 0.442
GDF7
TGF_BETA_2 domain-containing protein.
     
 0.438
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.