STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LNX1Ligand of numb-protein X 1. (733 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-like domain-containing protein.
   
  0.620
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.595
K7EXK2_PELSI
Ubiquitin-like domain-containing protein.
    
 0.545
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.533
IFT57
Intraflagellar transport 57.
    
 0.523
UBC
Uncharacterized protein.
   
  0.515
UBE2N
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
  0.511
TRAF3IP1
TRAF3 interacting protein 1.
    
 0.510
IFT172
Intraflagellar transport 172.
    
 0.508
IFT80
Intraflagellar transport 80.
    
 0.508
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.