Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AZL_003110 | AZL_004740 | AZL_003110 | AZL_004740 | mRNA 3-end processing factor. | Phosphoesterase. | 0.653 |
AZL_003110 | AZL_019390 | AZL_003110 | AZL_019390 | mRNA 3-end processing factor. | Metallophosphoesterase. | 0.813 |
AZL_003110 | lhr | AZL_003110 | AZL_019380 | mRNA 3-end processing factor. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.821 |
AZL_003110 | lig | AZL_003110 | AZL_003120 | mRNA 3-end processing factor. | DNA ligase (ATP). | 0.996 |
AZL_003880 | AZL_004740 | AZL_003880 | AZL_004740 | Hypothetical protein. | Phosphoesterase. | 0.430 |
AZL_003880 | dnaN | AZL_003880 | AZL_027260 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.980 |
AZL_003880 | holB | AZL_003880 | AZL_018170 | Hypothetical protein. | DNA polymerase III subunit delta'. | 0.788 |
AZL_003880 | lig | AZL_003880 | AZL_003120 | Hypothetical protein. | DNA ligase (ATP). | 0.711 |
AZL_004740 | AZL_003110 | AZL_004740 | AZL_003110 | Phosphoesterase. | mRNA 3-end processing factor. | 0.653 |
AZL_004740 | AZL_003880 | AZL_004740 | AZL_003880 | Phosphoesterase. | Hypothetical protein. | 0.430 |
AZL_004740 | dnaN | AZL_004740 | AZL_027260 | Phosphoesterase. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.581 |
AZL_004740 | holB | AZL_004740 | AZL_018170 | Phosphoesterase. | DNA polymerase III subunit delta'. | 0.684 |
AZL_004740 | lig | AZL_004740 | AZL_003120 | Phosphoesterase. | DNA ligase (ATP). | 0.742 |
AZL_019390 | AZL_003110 | AZL_019390 | AZL_003110 | Metallophosphoesterase. | mRNA 3-end processing factor. | 0.813 |
AZL_019390 | lhr | AZL_019390 | AZL_019380 | Metallophosphoesterase. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.963 |
AZL_019390 | lig | AZL_019390 | AZL_003120 | Metallophosphoesterase. | DNA ligase (ATP). | 0.830 |
dnaN | AZL_003880 | AZL_027260 | AZL_003880 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein. | 0.980 |
dnaN | AZL_004740 | AZL_027260 | AZL_004740 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Phosphoesterase. | 0.581 |
dnaN | holB | AZL_027260 | AZL_018170 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III subunit delta'. | 0.998 |
dnaN | lig | AZL_027260 | AZL_003120 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase (ATP). | 0.982 |
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