STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP24328.1Integrase core domain-containing protein. (341 aa)    
Predicted Functional Partners:
SEP24338.1
Hypothetical protein.
 
     0.612
SEP42772.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.606
SEO63532.1
Signal transduction histidine kinase.
  
 
 
 0.571
SEO32941.1
Catechol 2,3-dioxygenase.
  
     0.543
SEO63513.1
HAMP domain-containing protein.
  
 
 
 0.527
SEO29231.1
Hypothetical protein.
  
     0.524
SEO29209.1
Hypothetical protein.
  
     0.508
SEO07948.1
Protein of unknown function.
  
     0.489
SEP02173.1
P-aminobenzoate N-oxygenase AurF.
  
     0.470
SEP02084.1
P-aminobenzoate N-oxygenase AurF.
  
     0.441
Your Current Organism:
Rhodospirillales bacterium URHD0017
NCBI taxonomy Id: 1380357
Other names: R. bacterium URHD0017
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.