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rplQ protein (Desulfitobacterium hafniense) - STRING interaction network
"rplQ" - Similarity to COG0203 Ribosomal protein L17(Evalue: 3E-34) in Desulfitobacterium hafniense
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplQSimilarity to COG0203 Ribosomal protein L17(Evalue- 3E-34) (112 aa)    
Predicted Functional Partners:
rplO
50S ribosomal protein L15; Binds to the 23S rRNA (147 aa)
 
 
  0.999
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (129 aa)
 
 
  0.999
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites (123 aa)
 
 
  0.999
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (208 aa)
   
 
  0.999
rpsI
Similarity to COG0103 Ribosomal protein S9(Evalue- 3E-45); Belongs to the universal ribosomal protein uS9 family (131 aa)
 
 
  0.999
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (184 aa)
 
 
  0.999
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (163 aa)
 
 
  0.999
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family (166 aa)
 
 
  0.999
rpsP
Similarity to COG0228 Ribosomal protein S16(Evalue- 6E-28); Belongs to the bacterial ribosomal protein bS16 family (88 aa)
 
 
  0.999
rpmA
Similarity to COG0211 Ribosomal protein L27(Evalue- 7E-33); Belongs to the bacterial ribosomal protein bL27 family (98 aa)
   
 
  0.999
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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