STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgBHypothetical protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (632 aa)    
Predicted Functional Partners:
glgA
Hypothetical protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
 0.999
DSY2039
Hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 0.999
DSY2035
Hypothetical protein; Similarity to COG0366 Glycosidases(Evalue: 1E-115).
 
 
 0.998
glgC
Hypothetical protein; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
  
 0.998
DSY2037
Hypothetical protein; Similarity to COG0448 ADP-glucose pyrophosphorylase(Evalue: 3E-59).
 
  
 0.985
atpD
ATP synthase F1 beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.921
DSY2446
Hypothetical protein; Similarity to COG0438 Predicted glycosyltransferases(Evalue: 2E-86).
   
 0.659
DSY3017
Hypothetical protein.
   
 0.659
DSY3320
Hypothetical protein; Similarity to COG0438 Predicted glycosyltransferases(Evalue: 5E-28).
   
 0.659
DSY3321
Hypothetical protein; Similarity to COG0438 Predicted glycosyltransferases(Evalue: 3E-63).
   
 0.659
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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