STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJB91927.1Dehydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (408 aa)    
Predicted Functional Partners:
KJB97068.1
2-keto-3-deoxy-galactonokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.781
KJB93381.1
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.731
KJB97098.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.689
KJB93361.1
Mandelate racemase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 0.635
KJB92179.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.617
KJB96505.1
Racemase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.615
KJB92068.1
Mandelate racemase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.614
KJB97067.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.613
KJB96511.1
Mandelate racemase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
0.597
KJB94515.1
alpha-dehydro-beta-deoxy-D-glucarate aldolase; Cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.588
Your Current Organism:
Skermanella aerolata
NCBI taxonomy Id: 1385368
Other names: S. aerolata KACC 11604, Skermanella aerolata 5416T-32, Skermanella aerolata DSM 18479, Skermanella aerolata KACC 11604
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