STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV28312.1Glutamate or tyrosine decarboxylase. (503 aa)    
Predicted Functional Partners:
SFV31460.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.924
SFV30948.1
Acetylornithine/succinyldiaminopimelate/putresci ne aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.884
SFV35056.1
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.838
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.783
SFV27944.1
Ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.782
SFV28316.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
  0.729
SFV27470.1
Aspartate aminotransferase.
   
 
 0.699
SFV29003.1
Aspartate aminotransferase.
   
 
 0.699
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.699
SFV34125.1
Glutamate formiminotransferase.
   
 
  0.691
Your Current Organism:
Crenotalea thermophila
NCBI taxonomy Id: 1393122
Other names: C. thermophila, Chitinophagaceae bacterium STH-1-Y1, Crenotalea thermophila Hanada et al. 2014, DSM 14807, JCM 11541, strain STH-1-Y1
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