STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETB64211.1Hypothetical protein; RAAC4_OD1_1_661. (170 aa)    
Predicted Functional Partners:
dnaK
Hypothetical protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.873
ETB64231.1
Hypothetical protein; RAAC4_OD1_1_681.
   
 0.820
ETB64212.1
Secretion protein HlyD; RAAC4_OD1_1_662; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.775
ETB63775.1
Hypothetical protein; RAAC4_OD1_1_226; Belongs to the aspartokinase family.
   
   0.764
ETB64213.1
Hypothetical protein; RAAC4_OD1_1_663.
       0.749
ETB64214.1
Hypothetical protein; RAAC4_OD1_1_664.
       0.746
ETB64215.1
Hypothetical protein; RAAC4_OD1_1_665.
       0.726
tgt
Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]
    
  0.696
ETB63703.1
Hypothetical protein; RAAC4_OD1_1_154.
    
 0.635
ETB63748.1
Peptidase, M23/M37 family; RAAC4_OD1_1_199.
    
  0.621
Your Current Organism:
Parcubacteria bacterium RAAC4OD11
NCBI taxonomy Id: 1394712
Other names: P. bacterium RAAC4_OD1_1, Parcubacteria bacterium RAAC4_OD1_1, candidate division OD1 bacterium RAAC4_OD1_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.