STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_10006XlnR/XyrI. (947 aa)    
Predicted Functional Partners:
T310_0106
CreT.
    
 0.825
T310_6713
Alpha-L-arabinofuranosidase.
    
 0.813
T310_10188
Xylan 1,4-beta-xylosidase.
    
 0.801
T310_2411
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
    
 0.801
T310_4990
Glucanase; Belongs to the glycosyl hydrolase 7 (cellulase C) family.
    
 0.799
T310_0185
Catabolite repressor protein (CreC).
    
 0.791
T310_0262
Shikimate kinase.
     
 0.790
aguA
Alpha-glucuronidase; Alpha-glucuronidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose. Releases 4-O-methylglucuronic acid from xylan. Belongs to the glycosyl hydrolase 67 family.
      
 0.769
T310_9846
Beta-glucosidase.
    
 0.757
T310_3626
Glucanase; Belongs to the glycosyl hydrolase 7 (cellulase C) family.
    
 0.722
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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