STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T310_5797Dihydrouridine synthase family protein. (505 aa)    
Predicted Functional Partners:
T310_4894
WD repeat protein.
   
   0.832
T310_7999
RNA methylase family protein.
   
  
 0.784
T310_1954
GTP binding protein.
   
    0.776
T310_9989
Sas10 domain-containing protein.
   
    0.685
T310_0649
rRNA processing protein Bystin.
   
    0.676
T310_7507
RNA processing factor 1.
   
    0.674
T310_4501
tRNA (Uracil(54)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
  
 0.674
T310_7533
U3 small nucleolar ribonucleoprotein IMP4.
   
    0.672
T310_2136
Ribosome biogenesis protein Noc4.
   
    0.672
T310_3297
RNA helicase.
  
 
 0.671
Your Current Organism:
Rasamsonia emersonii
NCBI taxonomy Id: 1408163
Other names: R. emersonii CBS 393.64, Rasamsonia emersonii CBS 393.64, Rasamsonia emersonii CBS393.64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.