STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46590.1Pfam: Cell cycle protein; Belongs to the SEDS family. (475 aa)    
Predicted Functional Partners:
KOH46591.1
Pfam: Penicillin-binding Protein dimerisation domain; Pfam: Penicillin binding protein transpeptidase domain; TIGRFAM: pbp2_mrdA: penicillin-binding protein 2.
 
 0.985
KOH46594.1
PRINTS: Bacterial cell shape determinant MreB/Mbl protein signature; TIGRFAM: mreB: cell shape determining protein, MreB/Mrl family; Pfam: MreB/Mbl protein.
 
 
 0.938
KOH46593.1
Hypothetical protein; Involved in formation and maintenance of cell shape.
 
  
 0.911
KOH42502.1
Pfam: Penicillin binding protein transpeptidase domain; Pfam: Penicillin-binding Protein dimerisation domain; Pfam: PASTA domain; SMART:.
 
 
 0.897
murG
UDP-diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 0.844
KOH46592.1
Hypothetical protein; TIGRFAM: shape_MreD: rod shape-determining protein MreD.
 
    0.829
murC
UDP-N-acetylmuramate-L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.800
KOH42509.1
Hypothetical protein.
 
 
 0.797
KOH43480.1
Pfam: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).
 
  
 0.796
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.774
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.