STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V497_03819Uncharacterized protein. (1205 aa)    
Predicted Functional Partners:
V497_03928
Peptidase S59 domain-containing protein.
    
 0.991
V497_08512
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.985
V497_04926
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.985
V497_08208
Nup54 domain-containing protein.
    
 0.943
V497_07167
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
   0.918
V497_00324
UPF0029 domain-containing protein.
    
 0.873
V497_04070
Uncharacterized protein.
   
 0.867
V497_07240
NUP214 domain-containing protein.
    
 
 0.862
V497_01699
Uncharacterized protein.
    
 0.855
V497_07301
Non-specific serine/threonine protein kinase.
    
 0.840
Your Current Organism:
Pseudogymnoascus sp. VKMF4516
NCBI taxonomy Id: 1420910
Other names: P. sp. VKM F-4516 (FW-969), Pseudogymnoascus sp. VKM F-4516 (FW-969)
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