STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL84836.1NAD-dependent epimerase dehydratase. (213 aa)    
Predicted Functional Partners:
KRL84835.1
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
    0.758
KRL87198.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
 
  0.576
KRL85355.1
Acetyltransferase.
  
    0.478
KRL83452.1
Lipoprotein.
 
    0.435
lacD
Tagatose 1,6-diphosphate aldolase 2; Belongs to the aldolase LacD family.
   
    0.418
KRL83370.1
Hypothetical protein.
  
    0.401
Your Current Organism:
Lactobacillus apodemi
NCBI taxonomy Id: 1423724
Other names: L. apodemi DSM 16634 = JCM 16172, Lactobacillus apodemi DSM 16634, Lactobacillus apodemi DSM 16634 = JCM 16172, Lactobacillus apodemi JCM 16172, Lactobacillus apodemi JCM 16172 = DSM 16634
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.