STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM78452.1Hypothetical protein. (441 aa)    
Predicted Functional Partners:
KRM78451.1
Hypothetical protein.
     
 0.812
cshB
ATP-dependent DNA RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures.
       0.758
KRM78449.1
Hypothetical protein.
       0.721
KRM78308.1
Hypothetical protein.
  
     0.707
KRM79660.1
Hypothetical protein.
  
     0.704
KRM78532.1
Hypothetical protein.
  
     0.651
KRM79181.1
Hypothetical protein.
  
     0.601
KRM78444.1
Hypothetical protein.
  
     0.569
KRM79661.1
Histidine kinase family protein.
 
     0.555
KRM78221.1
Hypothetical protein.
  
     0.470
Your Current Organism:
Lactobacillus dextrinicus
NCBI taxonomy Id: 1423738
Other names: L. dextrinicus DSM 20335, Lactobacillus dextrinicus DSM 20335
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.