STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311215_00072Unannotated protein. (146 aa)    
Predicted Functional Partners:
pheS
Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 0.999
GCA_001311215_00071
Unannotated protein.
 
 0.999
pheT
Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
 0.999
GCA_001311215_00070
Unannotated protein.
 
 0.998
GCA_001311215_01728
Unannotated protein.
  
 
 0.962
metG
Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
 
 0.962
GCA_001311215_01730
Unannotated protein.
  
 
 0.962
rpsC
Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.911
GCA_001311215_01586
Unannotated protein.
  
  
 0.876
GCA_001311215_01587
Unannotated protein.
  
  
 0.876
Your Current Organism:
Lactobacillus florum
NCBI taxonomy Id: 1423745
Other names: L. florum DSM 22689 = JCM 16035, Lactobacillus florum DSM 22689, Lactobacillus florum DSM 22689 = JCM 16035, Lactobacillus florum F9-1, Lactobacillus florum JCM 16035, Lactobacillus florum JCM 16035 = DSM 22689, Lactobacillus florum NRIC 0771, Lactobacillus sp. F9-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.