STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL91473.1Aspartate transaminase. (389 aa)    
Predicted Functional Partners:
KRL90818.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.819
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
 
 0.683
KRL89255.1
M20 M25 M40 family peptidase; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
    
  0.668
KRL88188.1
Transcriptional regulator.
     
 0.600
KRL89570.1
Fumarate reductase flavoprotein subunit.
  
 
  0.577
KRL88240.1
Succinate dehydrogenase.
  
 
  0.577
KRL88215.1
Fumarate reductase flavoprotein subunit.
   
 
  0.577
KRL90345.1
Phosphopantothenoylcysteine decarboxylase phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
  
  0.535
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.509
KRL90583.1
Homoserine dehydrogenase.
  
 0.497
Your Current Organism:
Lactobacillus kalixensis
NCBI taxonomy Id: 1423763
Other names: L. kalixensis DSM 16043, Lactobacillus kalixensis DSM 16043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.