STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL04484.1N-acetyltransferase GCN5. (189 aa)    
Predicted Functional Partners:
KRL04135.1
Glutamate synthase large subunit.
   
 
 0.825
KRL04485.1
Zinc-binding oxidoreductase.
 
  
  0.608
KRL04480.1
NTP pyrophosphohydrolase.
 
    0.600
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.489
KRL04483.1
Flavin reductase.
       0.469
KRL04181.1
Hypothetical protein.
  
 
   0.446
KRL04949.1
Hypothetical protein.
  
     0.443
Your Current Organism:
Lactobacillus oeni
NCBI taxonomy Id: 1423777
Other names: L. oeni DSM 19972, Lactobacillus oeni DSM 19972
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.