STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL17268.1Cyclic nucleotide-binding domain protein. (223 aa)    
Predicted Functional Partners:
KRL17316.1
Glutamate synthase (NADPH).
    
 0.958
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.844
KRL17590.1
Hypothetical protein.
 
    0.795
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
    
  0.789
dps2
Stress induced DNA binding protein; Belongs to the Dps family.
 
     0.779
KRL17267.1
Hypothetical protein.
       0.773
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.723
rpoC
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.718
glpF
Channel protein, MIP family; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.706
KRL18822.1
Tetratricopeptide repeat protein.
    
 
 0.701
Your Current Organism:
Lactobacillus rapi
NCBI taxonomy Id: 1423795
Other names: L. rapi DSM 19907 = JCM 15042, Lactobacillus rapi DSM 19907, Lactobacillus rapi DSM 19907 = JCM 15042, Lactobacillus rapi JCM 15042, Lactobacillus rapi JCM 15042 = DSM 19907
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