STRINGSTRING
JQMD01000002_gene1963 protein (Zobellia uliginosa) - STRING interaction network
"JQMD01000002_gene1963" - annotation not available in Zobellia uliginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JQMD01000002_gene1963annotation not available (186 aa)    
Predicted Functional Partners:
JQMD01000002_gene1964
annotation not available (363 aa)
 
          0.974
JQMD01000002_gene1962
annotation not available (171 aa)
 
          0.912
JQMD01000002_gene1965
annotation not available (240 aa)
 
          0.868
JQMD01000002_gene2140
annotation not available (88 aa)
   
          0.683
JQMD01000002_gene1920
annotation not available (133 aa)
   
          0.669
JQMD01000002_gene3362
annotation not available (137 aa)
   
          0.656
JQMD01000002_gene2282
annotation not available (284 aa)
   
          0.650
JQMD01000002_gene2188
annotation not available (121 aa)
   
          0.648
JQMD01000002_gene501
annotation not available (190 aa)
   
          0.638
JQMD01000002_gene3375
annotation not available (83 aa)
   
          0.633
Your Current Organism:
Zobellia uliginosa
NCBI taxonomy Id: 143224
Other names: ACAM 538, ATCC 14397, Agarbacterium uliginosum, CCUG 33448, CECT 4277, CIP 104808, Cellulophaga uliginosa, Cytophaga uliginosa, DSM 2061, Flavibacterium uliginosum, Flavobacterium uliginosum, IFO 14962, JCM 21152, LMG 3809, NBRC 14962, Z. uliginosa, Zobellia uliginosa, strain ZoBell 553
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