STRINGSTRING
JQMD01000002_gene1964 protein (Zobellia uliginosa) - STRING interaction network
"JQMD01000002_gene1964" - annotation not available in Zobellia uliginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JQMD01000002_gene1964annotation not available (363 aa)    
Predicted Functional Partners:
JQMD01000002_gene1963
annotation not available (186 aa)
 
          0.974
JQMD01000002_gene1962
annotation not available (171 aa)
 
          0.919
JQMD01000002_gene1965
annotation not available (240 aa)
 
          0.872
JQMD01000002_gene3362
annotation not available (137 aa)
   
          0.710
JQMD01000002_gene501
annotation not available (190 aa)
   
          0.640
JQMD01000002_gene1920
annotation not available (133 aa)
   
          0.635
JQMD01000002_gene1961
annotation not available (69 aa)
              0.625
lon
Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner (822 aa)
              0.607
JQMD01000002_gene2282
annotation not available (284 aa)
   
          0.600
JQMD01000002_gene498
annotation not available (173 aa)
   
          0.588
Your Current Organism:
Zobellia uliginosa
NCBI taxonomy Id: 143224
Other names: ACAM 538, ATCC 14397, Agarbacterium uliginosum, CCUG 33448, CECT 4277, CIP 104808, Cellulophaga uliginosa, Cytophaga uliginosa, DSM 2061, Flavibacterium uliginosum, Flavobacterium uliginosum, IFO 14962, JCM 21152, LMG 3809, NBRC 14962, Z. uliginosa, Zobellia uliginosa, strain ZoBell 553
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