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JQMD01000002_gene2088 protein (Zobellia uliginosa) - STRING interaction network
"JQMD01000002_gene2088" - annotation not available in Zobellia uliginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JQMD01000002_gene2088annotation not available (1023 aa)    
Predicted Functional Partners:
JQMD01000002_gene2083
annotation not available (3437 aa)
 
  0.987
JQMD01000002_gene2087
annotation not available (319 aa)
 
          0.882
JQMD01000002_gene1957
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (609 aa)
   
  0.869
JQMD01000002_gene2085
annotation not available (1484 aa)
 
 
  0.839
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (237 aa)
     
    0.830
JQMD01000002_gene4202
annotation not available (4262 aa)
 
 
  0.828
JQMD01000002_gene3322
annotation not available (889 aa)
 
 
  0.825
JQMD01000002_gene3141
annotation not available (4856 aa)
 
 
  0.824
JQMD01000002_gene3792
annotation not available (1232 aa)
 
 
  0.823
JQMD01000002_gene2086
annotation not available (631 aa)
 
          0.817
Your Current Organism:
Zobellia uliginosa
NCBI taxonomy Id: 143224
Other names: ACAM 538, ATCC 14397, Agarbacterium uliginosum, CCUG 33448, CECT 4277, CIP 104808, Cellulophaga uliginosa, Cytophaga uliginosa, DSM 2061, Flavibacterium uliginosum, Flavobacterium uliginosum, IFO 14962, JCM 21152, LMG 3809, NBRC 14962, Z. uliginosa, Zobellia uliginosa, strain ZoBell 553
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